PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G253300.1.p
Common NameSb10g029130, SORBIDRAFT_10g029130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ARF
Protein Properties Length: 1160aa    MW: 128163 Da    PI: 6.7275
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G253300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.2e-23155256199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F
  Sobic.010G253300.1.p 155 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIF 241
                           99*****************************954.4444.48*********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              ++++++l+++++r+
  Sobic.010G253300.1.p 242 V--RDERQQLLLGIRRA 256
                           *..4577788***9997 PP

2Auxin_resp118.36.4e-39281364183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sobic.010G253300.1.p 281 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 364
                           79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-43144284IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41147270IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-19154246No hitNo description
PROSITE profilePS5086311.899155257IPR003340B3 DNA binding domain
PfamPF023627.7E-21155256IPR003340B3 DNA binding domain
SMARTSM010197.4E-23155257IPR003340B3 DNA binding domain
PfamPF065071.1E-33281364IPR010525Auxin response factor
PfamPF023091.1E-910251111IPR033389AUX/IAA domain
PROSITE profilePS5174527.21110261110IPR000270PB1 domain
SuperFamilySSF542772.55E-710381105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1160 aa     Download sequence    Send to blast
MIKQHQQQQQ APPPQPMPAS SAAPPAPAVP AAATAPSGCE GEKKAPPINS ELWHACAGPL  60
VSLPPAGSLV VYFPQGHSEQ VAASMQKDVD GHVPSYPNLP SKLICLLHNV TLHADPETDE  120
VYAQMTLLPV TSYGKEALQL SELALKQPRP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI  180
FPPLDFSMQP PAQEIQARDL HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVI  240
FVRDERQQLL LGIRRANRQP TNISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPRAS  300
PTEFVVPFAK YQKALYGNQI SLGMRFRMMF ETEELGTRRY MGTITGISDL DPVRWKNSQW  360
RNLQVGWDES AAGERRNRVS IWEIEPVAAP FFICPPPFFG SKRPRQLDDE SSEMENLLKR  420
AMPWLGEEIC IKDPQTQNTV MPGLSLVQWM NMNMQQNSSF GNSAMQSEYL RSLSNPNMQN  480
LGAADLSRQL NMQNQILQQN SIQFSSPKLP QQMQPVNELS KASLPLNQLG VGTKQQEQTQ  540
DPSSLQRQQQ SMNQLLPLSQ SQTNLVQAQV LIQNQMQQQQ QPPSMTQNLQ PAASQSLLLP  600
HQQQQQHQQQ KLVHQQQQLL LQQQQLQQQQ QNQQQLNKMA AQVPNLAPHQ LQLSDQQLQL  660
QLLQKLQQQH QSLLSQPGVT LAQLPLIQEQ QKLIIDMQQQ LSNSQSLSQQ QIMTQQSTKV  720
PSQATPPPPT GQQESQQKLP QKHVGFTDTS HTAIPPTTSV NAISAVGSPL MATGATHSVL  780
TDEIPSCSTS PSTANGNHLL QPVLGRNQQC SVINYEKLPQ STAPMSIPSS LEAVTATPRS  840
IKELPKLNSN VKQSVMASKL PNTGPVPQNL ANNAPPTDYL ETASSATSVW LSQADGLLHH  900
GFPMSNFNQQ QMFKDVAPET DIHGADPSNN TLFGINGDGQ LGFPMGADGF LSNGIDASKY  960
QNHISADIDG NYRIPKDGQQ EISSSMVSQS FGASDMAFNS IDSGMNDGGF VNRTSWPPAP  1020
PLKRMRTFTK VYKRGAVGRS IDISQFNGYD ELKHALARMF SMEGQLEERQ RIGWKLVYKD  1080
HEDDILLLGD DPWEEFVNCV KCIRILSPQE VQQMSLDGDL GNNILPNQAC SSSDGGNAWR  1140
ARCDQNSGNP STGSYDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1664438547388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437545.10.0hypothetical protein SORBIDRAFT_10g029130
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLC5Z9810.0C5Z981_SORBI; Auxin response factor
STRINGSb10g029130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19